Special

MmuEX0037406 @ mm9

Exon Skipping

Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:164653241-164670681:-
Coord C1 exon
chr1:164670456-164670681
Coord A exon
chr1:164654835-164655000
Coord C2 exon
chr1:164653241-164653418
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTATGCATTACAAAGACT
3' ss Score
0.5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGCACGTAGGGGCTGGCTAGCCGCCATCTTGCTTCTTTTTCTCGCTCGCTCTCACCCTCTCAGGAGGTAGCGAAAGTGCTTTGGCGGTTTGTACGGCGGTGGCTCGGGCTTTCGGGACCGAGCGGCCCTGCGGACGGTCTCTCGAGGCAATCTCCCCTCCCCTGACCCTGATCCGTCCGGGGCGAGCCCCTTGGAAGCGCGCAGACTTGGTTCTCAACCCTGGCGG
Seq A exon
ACTACTTTTAAGGGGTGTGTCAGGAGGTTTTGGACTAGATGAGTTTCCACCGAAATGTCGGAGAAGTCAGGCCAGAGCACAAAAGCCAAGGATGGGAAGAAGTATGCAACACTCAGTTTGTTTAACACTTACAAAGGAAAGTCCTTGGAAACACAGAAGACTACAG
Seq C2 exon
TTGCAGCTCGACATGGGTTACAAAGTCTTGGAAAAGTTGGTATTTCACGGCGAATGCCCCCACCTGCTAACCTTCCAAGTCTCAAAGCAGAGAACAAAGGCAATGATCCTAATGTGAATATTGTGCCCAAAGATGGGACAGGATGGGCATCGAAACAAGAGCAACATGAAGAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225-'0-4,'0-2,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=0.868 C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
PF070016=BAT2_N=PU(22.2=97.4)

							
C2:
PF070016=BAT2_N=FE(35.3=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000028016





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000028016f5784A, ENSMUSP00000038401, ENSMUSP00000038999
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr1:171512032-171512200 
ALTERNATIVE
HsaEX0007656
(PRRC2C)
Human
(hg19)
chr1:171481171-171481339 
ALTERNATIVE
HsaEX0007656
(BAT2D1)
Rat
(rn6)
chr13:80596586-80596751 
HIGH PSI
RnoEX0000931
Cow
(bosTau6)
chr16:39871557-39871722 
HIGH PSI
BtaEX6068501
(PRRC2C)
Chicken
(galGal4)
chr8:4765200-4765367 
HIGH PSI
GgaEX1046445
(PRRC2C)
Chicken
(galGal3)
chr8:4910414-4910581 
HIGH PSI
GgaEX1046445
([1])
Zebrafish
(danRer10)
chr20:15162989-15163158 
HIGH PSI
DreEX0058713
(prrc2c)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GACGGTCTCTCGAGGCAATCT

				
R: 
GCCCATCCTGTCCCATCTTTG

				
Band lengths: 
242-408

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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