MmuEX0037406 @ mm10
Exon Skipping
Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:162723110-162740525:-
Coord C1 exon
chr1:162740325-162740525
Coord A exon
chr1:162724704-162724869
Coord C2 exon
chr1:162723110-162723287
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTATGCATTACAAAGACT
3' ss Score
0.5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCTTGCTTCTTTTTCTCGCTCGCTCTCACCCTCTCAGGAGGTAGCGAAAGTGCTTTGGCGGTTTGTACGGCGGTGGCTCGGGCTTTCGGGACCGAGCGGCCCTGCGGACGGTCTCTCGAGGCAATCTCCCCTCCCCTGACCCTGATCCGTCCGGGGCGAGCCCCTTGGAAGCGCGCAGACTTGGTTCTCAACCCTGGCGG
Seq A exon
ACTACTTTTAAGGGGTGTGTCAGGAGGTTTTGGACTAGATGAGTTTCCACCGAAATGTCGGAGAAGTCAGGCCAGAGCACAAAAGCCAAGGATGGGAAGAAGTATGCAACACTCAGTTTGTTTAACACTTACAAAGGAAAGTCCTTGGAAACACAGAAGACTACAG
Seq C2 exon
TTGCAGCTCGACATGGGTTACAAAGTCTTGGAAAAGTTGGTATTTCACGGCGAATGCCCCCACCTGCTAACCTTCCAAGTCTCAAAGCAGAGAACAAAGGCAATGATCCTAATGTGAATATTGTGCCCAAAGATGGGACAGGATGGGCATCGAAACAAGAGCAACATGAAGAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225-'0-7,'0-5,6-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.878 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF070016=BAT2_N=PU(22.4=97.4)
C2:
PF070016=BAT2_N=FE(34.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGTCTCTCGAGGCAATCT
R:
GCCCATCCTGTCCCATCTTTG
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types