HsaEX0007656 @ hg19
Exon Skipping
Gene
ENSG00000117523 | BAT2D1
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:24903]
Coordinates
chr1:171454666-171482311:+
Coord C1 exon
chr1:171454666-171454874
Coord A exon
chr1:171481171-171481339
Coord C2 exon
chr1:171482134-171482311
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATGTACATCTTAAGGAC
3' ss Score
6.17
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCCGCCATCTTGCTTCTTTTTCTCGCTCGCTCGCTCCCCCTCGGAAAGCTGCGAAAGTGCTTTGGCGGTTTGTCCATCCGCAGCTTCGGCTTTTCCAGTCTGGTGGCCCTTCCGGCCACCCCTTTAACCCCAGCTTTCCCTCCCCCTTCTTTCGATCAGAGATCGGCGGAGACCCTCGAAGTGCGCAAACTTGACACTCACCCTGACCG
Seq A exon
GACTGGGGTTTTAAGGGGTGTGGCAGGAGGTTTTGGACTCGATGAGTTTCCACCGAAATGTCGGAGAAGTCAGGCCAGAGCACAAAAGCAAAGGATGGGAAAAAGTATGCAACACTCAGTTTATTTAATACTTACAAGGGGAAATCATTAGAAACACAGAAAACCACAG
Seq C2 exon
TTGCAGCTCGACATGGATTACAGAGTCTTGGAAAAGTCGGTATTTCACGGCGTATGCCTCCACCTGCTAACCTCCCAAGTCTTAAAGCAGAAAACAAAGGCAATGATCCTAATGTAAACATTGTACCTAAAGATGGCACAGGGTGGGCATCAAAACAAGAGCAACATGAAGAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.974 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF070016=BAT2_N=PU(22.6=97.4)
C2:
PF070016=BAT2_N=FE(35.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCTTTTTCTCGCTCGCT
R:
GCATACGCCGTGAAATACCGA
Band lengths:
256-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)