HsaALTA0000895-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000117523 | BAT2D1
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:24903]
Coordinates
chr1:171481171-171482311:+
Coord C1 exon
chr1:171481171-171481339
Coord A exon
chr1:171482134-171482139
Coord C2 exon
chr1:171482140-171482311
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGATGTTATTGATCTTTAGTTG
3' ss Score
5.35
Exon sequences
Seq C1 exon
GACTGGGGTTTTAAGGGGTGTGGCAGGAGGTTTTGGACTCGATGAGTTTCCACCGAAATGTCGGAGAAGTCAGGCCAGAGCACAAAAGCAAAGGATGGGAAAAAGTATGCAACACTCAGTTTATTTAATACTTACAAGGGGAAATCATTAGAAACACAGAAAACCACAG
Seq A exon
TTGCAG
Seq C2 exon
CTCGACATGGATTACAGAGTCTTGGAAAAGTCGGTATTTCACGGCGTATGCCTCCACCTGCTAACCTCCCAAGTCTTAAAGCAGAAAACAAAGGCAATGATCCTAATGTAAACATTGTACCTAAAGATGGCACAGGGTGGGCATCAAAACAAGAGCAACATGAAGAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523-2-4,2-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PU(22.6=97.4)
A:
NA
C2:
PF070016=BAT2_N=FE(34.8=100)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGGGAAATCATTAGAAACACA
R:
GTTAGCAGGTGGAGGCATACG
Band lengths:
101-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)