DreEX0058713 @ danRer10
Exon Skipping
Gene
ENSDARG00000057583 | prrc2c
Description
proline-rich coiled-coil 2C [Source:ZFIN;Acc:ZDB-GENE-081104-156]
Coordinates
chr20:15160215-15181143:-
Coord C1 exon
chr20:15180767-15181143
Coord A exon
chr20:15162989-15163158
Coord C2 exon
chr20:15160215-15160392
Length
170 bp
Sequences
Splice sites
3' ss Seq
TTCTTGCTCTCTTCAATAAGGGG
3' ss Score
5.41
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGGATTGGCGCTCTGCCATCTTTGATTGTGCGACAGGCCGCGGCGCGAGCGGGGCCTCTCTCGAGCGCACGAGAAACCGCCAACCGCCCGTTACTGCTCACCTCACACCGGCGGCGCAACCGGAGAGATACCAGGAGTTAAAAACGACCGAGAGGAGAGGAGAAGCGCGTCTCTCTCGTCTGTGAAAGGGGTTTTGTGGGTCGCTAACCGCTCGGCTAGCTGGAACTAGCATAGCACGAGCTTTTGTAATCCACAGCCGGCCTCTCTCACACACACGCGCTGAAAGACACAAAACAAAGGGCCCGAACGCAAAGCTTCTGGACGGAATAAATCACAAGGTTACACCTGAAGAGAGAGACGGGACCGGCGGAGACAG
Seq A exon
GGGCTGGTTCTGAGGGGTGAGGCCGCAGGACCAGACTCAATGAGTTTCCAGCGAAATGTCCGAGAAGTCAGGGCAGAGCACCAAGGCAAAGGATGGCAAGACCAAGTATGCAACCCTTAGCCTCTTCAACACGTACAAGGGAAAGTCTTTGGAGACGCAGAAAACTGCAG
Seq C2 exon
TTGCCGCCAGACATGGGCTCCAAAGTTTGGGTAAAGTTGCGGTCAGTCGACGCATGCCCCCTCCAGCTAACCTGCCCAGCCTAAAAGCTGAGAACAAAGGCAATGATCCCAATGTTAGCATAGTACCCAAGGATGGCAGTGGATGGGCTTCCAGACAAGATCAACCAGGAGACGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057583-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF070016=BAT2_N=PU(22.8=97.4)
C2:
PF070016=BAT2_N=FE(35.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGGGGTTTTGTGGGTCG
R:
CGTCGACTGACCGCAACTTTA
Band lengths:
246-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]