BtaALTA0023655-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016973 | PRSS8
Description
protease, serine, 8 [Source:HGNC Symbol;Acc:HGNC:9491]
Coordinates
chr25:27487156-27489032:-
Coord C1 exon
chr25:27489015-27489032
Coord A exon
NA
Coord C2 exon
chr25:27487156-27487318
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCCCATTCCTCTCCCAGCAGACT
3' ss Score
8.09
Exon sequences
Seq C1 exon
GAGCCGTTGCGGCTGAAG
Seq A exon
NA
Seq C2 exon
ACTCTTGTGGTATGGTCCCTCAAGGACGCATCACAGGTGGTACCACTGCAGCTCTCGGCCAGTGGCCCTGGCAGGTCAGCATCAACCACCACGGCACCCACGTGTGTGGCGGCTCTCTCGTGTCCGATCAGTGGGTGCTATCGGCTGCTCACTGCTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016973-1-3,1-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.6=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development