BtaINT0118811 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016973 | PRSS8
Description
protease, serine, 8 [Source:HGNC Symbol;Acc:HGNC:9491]
Coordinates
chr25:27487156-27489032:-
Coord C1 exon
chr25:27489015-27489032
Coord A exon
chr25:27487322-27489014
Coord C2 exon
chr25:27487156-27487321
Length
1693 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCTCCCATTCCTCTCCCAGCAG
3' ss Score
7.98
Exon sequences
Seq C1 exon
GAGCCGTTGCGGCTGAAG
Seq A exon
GTGAGGCTCACCCGGGAGGAATGGGGAAGGGGAAGGTGAGGGGTGGGGCCAGGGGTTCAGATTTCCATGGAGCATTGGAGCACCTGACCCTCTCTGCAAAGCTGCTTCGTCCACTCCCGTTGTCCCTAGTAGCACTTGAGGTGGGGATGATAGCCTCAATCTTTAAGACAGTGACGGGCAGATAAGTGACTTGCCCAACGGCACACAGCCAGTAAGTGGCTGCGCTGGGATTTGAACTCAGGTCTGAGTCCAAAGGTGGGTTGTTTTGAGGGGAACAAACCAAGGGTTAGTCTCCTTGGCAGTCCCTGCTTCACCATGTACCGCTATGTCTCACGCGGCCAGTCCCCTCACCTCTAAAATGAAGGAATTCCCTGGTGGTCCAGTGGTCAGGACCCTGTGGTTTCACCGTCAAGGGCCCGGTTTGATCCCTGGTTGGGGAACTAGGATCCCACAGACCATGCAGCGCAAGCCAGAACAAAATGAAGTCAATCTGTCTACCTCCTGGGGCTGCTTGAGGAGTCAGGAAGATGAAGGAAGTGAAAGCCCCTTCAGGGCCTGGCATTGCTTGAACTCTTGGTCCCTAAATGGTAGCTATTGTCCTTTTTACGAGGAGATGGGGAGGAGCCTGGCTGGGTGGTTTTCCCTGCACCTGAGAAGGTGACTTTGTGAAGGGCATTTGGGTCCTGCTCCAAACAGTGGCCTTCACAGGGGTGGGGCTGTCCTGGAAATGAAATGAGATGCTCACACCCTGGGATCCAGGCTGTTCTGCTCATTTGTTCAACACATCCACGACTCCATTTGTGTGCCCAGCAGTGAGGACGTGTGAGTCTGCCCTCGTCTCTGCCCCTAGGGAATGCCCAAGTTGGTTGGTTGAAGTAGATGGTGAGAATGCGAACAGCCCTGTCCAGGAAGCATAGACCCTGGGAGCTCTAAGGCATCACCTATCTCAGCCAGCGGGGTGACGGCAGACTTCAGAGGGGCTGGTATTTGAACCACCACTATAGGCAAATGGAAGTTGTTGTATTCAGTTGCTAAGTTTTGGCCAACTCTTTGCAACCCCATGGACTGCAGCACTCCCGGCTCCTCTATCTACTATCTCCCAGAATTTGCTCAAATTCACGTCCATTGATGTCTAACCATCTCATCCTCTGCTACCCCCTTCTCCTTTTGCCTTCAGTCTTTCCCAGCATCAGGGTCTTTTCCAGTGAGTCAGCTTTTCCCATCAGGGTGCCAAAGTATCACCATTTCACATTTCAAATAGAAGTGGGGATGAGGAAGACTACCTTAGGTGGAGTGATCTGAGTAAGCAAAGGTCCAGAGGTCTAGTGTGTGGCCTGACGTGACAGTGAGTGTCCAGATGGGTGGCGGAGTGGACGGCAGCGCCACGGGAGGTCCGGAATCTCTCTTAAGGGCAGAGTGGAGCCAGGGAAGGATTTAAGCAGTGGTGTGAACTGGCCAGATATGTAAGGAGTAGATCAGATGGAAGGCAGGAAGGCCTGAGAGGACAGAAGCTGGGTGAGACCTTTAATGAGCCAGGACAGCAGGTGACTGGTGAGCTGGGGGATGGGGACAAAGCCTGGCGGGCTTCTGTGAACTCACCCCTGAAGCTCCAAACCAGACTTTTGGGCTGTGTCGGGTGAGGAAGTGGTCTGCTGGCTCCAGAGGTCCTGACCCTCTCCCATTCCTCTCCCAG
Seq C2 exon
CAGACTCTTGTGGTATGGTCCCTCAAGGACGCATCACAGGTGGTACCACTGCAGCTCTCGGCCAGTGGCCCTGGCAGGTCAGCATCAACCACCACGGCACCCACGTGTGTGGCGGCTCTCTCGTGTCCGATCAGTGGGTGCTATCGGCTGCTCACTGCTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016973:ENSBTAT00000037413:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.6=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]