BtaEX0028713 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016973 | PRSS8
Description
protease, serine, 8 [Source:HGNC Symbol;Acc:HGNC:9491]
Coordinates
chr25:27487156-27489416:-
Coord C1 exon
chr25:27489332-27489416
Coord A exon
chr25:27489015-27489032
Coord C2 exon
chr25:27487156-27487321
Length
18 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTCTCTCCCTCCAGGAG
3' ss Score
14
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGGCCCGGAAGTCGGGCCTGGGGCCCAGGTGGCTGGAGGCTGTGGCCACTGTGCTTTTGCTTGGATTATTCCGGAATGGGATAG
Seq A exon
GAGCCGTTGCGGCTGAAG
Seq C2 exon
CAGACTCTTGTGGTATGGTCCCTCAAGGACGCATCACAGGTGGTACCACTGCAGCTCTCGGCCAGTGGCCCTGGCAGGTCAGCATCAACCACCACGGCACCCACGTGTGTGGCGGCTCTCTCGTGTCCGATCAGTGGGTGCTATCGGCTGCTCACTGCTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016973-'0-2,'0-0,1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(18.6=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGGATTATTCCGGAATGGG
R:
GTTGATGCTGACCTGCCAGG
Band lengths:
116-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development