HsaEX6043357 @ hg19
Exon Skipping
Gene
ENSG00000052344 | PRSS8
Description
protease, serine, 8 [Source:HGNC Symbol;Acc:9491]
Coordinates
chr16:31144547-31147151:-
Coord C1 exon
chr16:31146735-31147151
Coord A exon
chr16:31146475-31146492
Coord C2 exon
chr16:31144547-31144709
Length
18 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTCTTTCTTTCTAGGAG
3' ss Score
12.89
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GACTTTGGTGGCAAGAGGAGCTGGCGGAGCCCAGCCAGTGGGCGGGGCCAGGGGAGGGGCGGGCAGGTAGGTGCAGCCACTCCTGGGAGGACCCTGCGTGGCCAGACGGTGCTGGTGACTCGTCCACACTGCTCGCTTCGGATACTCCAGGCGTCTCCCGTTGCGGCCGCTCCCTGCCTTAGAGGCCAGCCTTGGACACTTGCTGCCCCTTTCCAGCCCGGATTCTGGGATCCTTCCCTCTGAGCCAACATCTGGGTCCTGCCTTCGACACCACCCCAAGGCTTCCTACCTTGCGTGCCTGGAGTCTGCCCCAGGGGCCCTTGTCCTGGGCCATGGCCCAGAAGGGGGTCCTGGGGCCTGGGCAGCTGGGGGCTGTGGCCATTCTGCTCTATCTTGGATTACTCCGGTCGGGGACAG
Seq A exon
GAGCGGAAGGGGCAGAAG
Seq C2 exon
CTCCCTGCGGTGTGGCCCCCCAAGCACGCATCACAGGTGGCAGCAGTGCAGTCGCCGGTCAGTGGCCCTGGCAGGTCAGCATCACCTATGAAGGCGTCCATGTGTGTGGTGGCTCTCTCGTGTCTGAGCAGTGGGTGCTGTCAGCTGCTCACTGCTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000052344-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(91.7=80.0),PF0008921=Trypsin=PU(0.9=1.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGGATTACTCCGGTCGGG
R:
CATAGGTGATGCTGACCTGCC
Band lengths:
116-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)