RnoEX0070389 @ rn6
Exon Skipping
Gene
ENSRNOG00000019616 | Prss8
Description
serine protease 8 [Source:RGD Symbol;Acc:619973]
Coordinates
chr1:199374908-199377035:-
Coord C1 exon
chr1:199376728-199377035
Coord A exon
chr1:199376506-199376523
Coord C2 exon
chr1:199374908-199375070
Length
18 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTCTTTCCCTCCAGGAG
3' ss Score
13.87
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TGTGCTGAACAGGGCCACACTGGTCACTACAGAGACCAAAGGCGTGTCCCGTCTTCTATACCCTGTGTCCATTTCCTGCCGAGAAGCCTGCTTCAACCTTCCCAGCCTAGATCCTGGGATTCTTCACTTCTGAGCCCACACCTAGATCCTGACTTCCAAACCAGCCTTCAATTCCATCCCTTTCTACCTAGAGTCTCCTTCAGGGGGGCCCTTGTCCGGGGCCATGGCCCTAAGGGTGGGCCTGGGACTTGGGCAGCTGGAAGCCCTGTTTGTTCTGCTCCTTATTGGATTGCTCCAGTCAAGAATCG
Seq A exon
GAGCTGATGGGACTGAAG
Seq C2 exon
CTTCCTGTGGTGCAGTCATCCAGCCACGCATCACAGGTGGTGGCAGTGCGAAGCCTGGTCAATGGCCCTGGCAGGTCAGCATCACCTACAATGGCGTCCACGTTTGTGGTGGGTCTCTCGTGTCAAATCAATGGGTGGTGTCAGCTGCTCACTGCTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019616-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(18.6=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGTTTGTTCTGCTCCTT
R:
ATTGACCAGGCTTCGCACTG
Band lengths:
109-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]