MmuEX6014421 @ mm10
Exon Skipping
Gene
ENSMUSG00000030800 | Prss8
Description
protease, serine 8 (prostasin) [Source:MGI Symbol;Acc:MGI:1923810]
Coordinates
chr7:127927809-127930104:-
Coord C1 exon
chr7:127929798-127930104
Coord A exon
chr7:127929557-127929574
Coord C2 exon
chr7:127927809-127927971
Length
18 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTCTTTCCCTCCAGGAG
3' ss Score
13.87
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATTGTAAGGCAGAACAGGTCCACGCTGGTCACTGCAGAGAGACTAAAGGTGTGTCCCGTCTTCCCCCTGGCCATTTTCTGCCGAGAAGCCTGCTTCACCTTCCCAGCCTAGATCCTGGGATTCCTCACTCTGATCCCACACCTAGATCCTGCCTTCAAAACCAGCCTTCTGGTTCTTCCCTTTCTACCTAGGGGCTCCTTCGGGGGGCCCTTGTCCTAGGCCATGGCCCTAAGGGTGGGCCTGGGACTTGGGCAGCTGGAAGCTGTGACCATTCTGCTCCTTCTCGGATTGCTCCAGTCGGGAATCC
Seq A exon
GAGCTGACGGGACTGAAG
Seq C2 exon
CCTCCTGTGGTGCCGTCATCCAGCCACGCATCACCGGTGGTGGCAGTGCAAAGCCCGGTCAGTGGCCCTGGCAGGTCAGCATCACCTACGATGGCAACCATGTTTGTGGCGGGTCGCTCGTGTCAAATAAATGGGTGGTGTCTGCTGCTCACTGCTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030800-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(18.6=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTCGGATTGCTCCAGT
R:
TAGGTGATGCTGACCTGCCAG
Band lengths:
118-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types