BtaALTA0026351-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103954269-103954725:-
Coord C1 exon
chr11:103954527-103954725
Coord A exon
chr11:103954438-103954443
Coord C2 exon
chr11:103954269-103954437
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TCCGCTTTGTGCTCCCGAAGAGT
3' ss Score
5.67
Exon sequences
Seq C1 exon
GCCCGAGAAATACGATGACCGCTACAGGTACGACCCCCGCTTCACCGGGAGCTTTGACGATGAGCCCGAGCCACCTCGGGACCCTTACGGGGAGGAGGTGGACCGGCGTAGTGAGCACAGCGAGCACTCGGCACGGAGCCTGCGCAGCGCGCCCAGCCTGCAGAGCCGCCGCAGCAGCTTCAGCGCCCACTCCCACCAG
Seq A exon
AGTCAG
Seq C2 exon
GTGTACCGGAGTCATAACGTGCCCTCCGGGTCCTATGAGGTGCCCCCTCCGCCGGGCTCCTTCCACGGTGATTACGCCTACGGCCCCTACGGGAGCGACTTCCATGGCGCACCAGGCTTTCCAGAGTACGGCTACCCCGCCGAGGCCAGCTGGCCCTCCGTGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-11-9,11-8,11-7-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.940 A=NA C2=0.847
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGCGCCCACTCCCA
R:
CGTAATCACCGTGGAAGGAGC
Band lengths:
98-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development