BtaALTA0026701-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19855316-19855592:-
Coord C1 exon
chr3:19855436-19855592
Coord A exon
chr3:19855350-19855352
Coord C2 exon
chr3:19855316-19855349
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TATGATCTCTAATCTCCTAGAAG
3' ss Score
6.35
Exon sequences
Seq C1 exon
GTGCTGTGAGAAGCAAAGGTCCTGTGGTCCAGTACACTCAGGATCTAACAAGTACTGGAACCCAGTTCAAGCCTATGGAACCCCCACAGCCGACAGCCCCACCTGCCCCACCTGCCCCACCTGGTCCAGCTCTGTCCCCCCAGGCAGGTGACAGTGA
Seq A exon
AAG
Seq C2 exon
CTTGGAAGGCCAGCTTGCCCAATCTCGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098-25-18,25-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCCCCACAGCCGACAG
R:
CCGAGATTGGGCAAGCTGG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development