BtaALTA0027509-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000046379 | SLC34A3
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr11:105869898-105870773:-
Coord C1 exon
chr11:105870673-105870773
Coord A exon
NA
Coord C2 exon
chr11:105869898-105870021
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ACTGCCCTTCTTGCCAGCAGATC
3' ss Score
7.71
Exon sequences
Seq C1 exon
TCAGTACACGGCAGGTCATGTGTGCGCCCAGCGGATCTTTGACCTGCAGCTGCTCTCGGCCCGTGTCTCCTCCCCGAAGGTGCCCCTCACTGCCCACACAG
Seq A exon
NA
Seq C2 exon
ATCTGGGTCTGGGCCTGGGTCCGTTCCTGCCTGAAATCCATGCCGCATCCCCTCACCGGGGGCCCGGCCCCTCCCACCCCTCTGGACACAGTTGGCCTGGTAGACCAGAGGCTGGGAGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046379-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACACGGCAGGTCATGTG
R:
CTGCGTCTCCCAGCCTCT
Band lengths:
224-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development