GgaALTA1029535-2/5 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003075 | SLC34A1
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr13:9448664-9448972:+
Coord C1 exon
chr13:9448664-9448695
Coord A exon
chr13:9448832-9448855
Coord C2 exon
chr13:9448856-9448972
Length
24 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CAGATGTGGCCCCACCACAGTGA
3' ss Score
1.88
Exon sequences
Seq C1 exon
TGGCATTGCTCTGAGTGCTTGGCCAGCACCAG
Seq A exon
TGACGTGTGGCTGCGTCTGCTCAG
Seq C2 exon
ACTCAGCCGGAGTGATGCTGTCATACCGGAGGGAGAGCCCAGCCATGCCCCGCTGCCCGGTGCGGGGAGGAAGGGTGGTGCACGGGACCCCGTTTGCCTACTGCCCCAGCCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075-0-4,0-3,0-2,0-1,0-0-2/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATTGCTCTGAGTGCTTG
R:
TGCACCACCCTTCCTCCC
Band lengths:
114-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]