BtaALTA0030724-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22484583-22488765:-
Coord C1 exon
chr7:22488624-22488765
Coord A exon
chr7:22484694-22484710
Coord C2 exon
chr7:22484583-22484693
Length
17 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GGCCCTGGTCTCGTCCGCAGCCT
3' ss Score
8.39
Exon sequences
Seq C1 exon
ATGGAGCCCACTGCCAGTGACTTACAGCTGGTGCCTGGAGCCACCAAGGACGTCCTGGCTGCAGATGCCATGTGCTGCCGGGCGGCCCTGTCCACTGTTGTGGCCACCAGCATCGTCCTCGTCATCCTGGGAGTCCTTGTGG
Seq A exon
CCTCCCTCTCTACACAG
Seq C2 exon
GGCGTCGACGTAGAGCACATGGCTGAGCTGCGTGGGATCCGGTTTGCCCCCAGCTTGCAGCAGGAGACCTCAGAGTACTACCGCACGCTGACGCCCGCTCTGGAAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139015=SEA=PU(48.7=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTCATCCTGGGAGTCCTT
R:
TACTCTGAGGTCTCCTGCTGC
Band lengths:
102-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development