GgaALTA1032873-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000458 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr28:615634-616372:+
Coord C1 exon
chr28:615634-615751
Coord A exon
NA
Coord C2 exon
chr28:616245-616372
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ACACCTTCCCTCTCTGGCAGCCT
3' ss Score
8.8
Exon sequences
Seq C1 exon
ATGGACCAAATAAAGCCAGTGCTGGGCAGAAGGGGACCGAGGGCCAGCTGCTGGAAGGTGACCATCACTGCCACTGTAGTGGGCGGTGTGACAGCCCTCTACCTGGGGATCCTGCTGG
Seq A exon
NA
Seq C2 exon
CCTGTCATCCTGCAGCAGAGACCAGCTTTGAGCACACAGTGGAGCTGCGAGGGATCACGTTCAACAGCAGCTTGCAGGCAGAGAACTCAGACTATTACCGGGTGCTGACGCCCGCCCTCGAGAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000458-1-1,1-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139015=SEA=PU(36.9=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACCTGGGGATCCTGCTG
R:
AGTCTGAGTTCTCTGCCTGCA
Band lengths:
115-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]