HsaALTA1048775-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr19:2389771-2396666:+
Coord C1 exon
chr19:2389771-2389927
Coord A exon
chr19:2396539-2396555
Coord C2 exon
chr19:2396556-2396666
Length
17 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GGCCCTGGTCTCGTCCCCAGCCT
3' ss Score
6.68
Exon sequences
Seq C1 exon
GCGTGTCTCTGAGCCATGGAGCCCACTGTGGCTGACGTACACCTCGTGCCCAGGACAACCAAGGAAGTCCCCGCTCTGGATGCCGCGTGCTGTCGAGCGGCCAGCATTGGCGTGGTGGCCACCAGCCTTGTCGTCCTCACCCTGGGAGTCCTTTTGG
Seq A exon
CCTTCCTCTCTACACAG
Seq C2 exon
GGCTTCCACGTGGACCACACGGCCGAGCTGCGGGGAATCCGGTGGACCAGCAGTTTGCGGCGGGAGACCTCGGACTATCACCGCACGCTGACGCCCACCCTGGAGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACCCTGGGAGTCCTTTT
R:
GGTGATAGTCCGAGGTCTCCC
Band lengths:
105-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains