BtaALTA0031445-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102982289-102982834:-
Coord C1 exon
chr11:102982723-102982834
Coord A exon
NA
Coord C2 exon
chr11:102982289-102982401
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CTGCTCTTGTCTTGGAGCAGGTG
3' ss Score
6.21
Exon sequences
Seq C1 exon
GCTACTCTTTGGAGCCCATCTGCAGTTTGTGGGATGACCACTCCTCCAACTTCTCCTGGAAATGTCCCACCTGATCTGTCACATCCTTACAGTAAAGTCTTTGGTACAACTG
Seq A exon
NA
Seq C2 exon
GTGGGAAAGGAACTCCTCTGGGAACCCCTGCAACCTCTCCTCCTCCAGCCCCACCCTGCCATTCGGACGACTGCGTGCACCTTTCACTCCCACAGGCCACGGCCCCCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190-16-19,16-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(5.2=100)
A:
NA
C2:
PF043887=Hamartin=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAAATGTCCCACCTGA
R:
CTGGAGGAGGAGAGGTTGCAG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development