RnoALTA0042441-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7251195-7251674:+
Coord C1 exon
chr3:7251195-7251309
Coord A exon
NA
Coord C2 exon
chr3:7251556-7251674
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
TTGTCCTTGTGTCTGAGCAGGTG
3' ss Score
8.39
Exon sequences
Seq C1 exon
GCTAGTCTTTGGAGCCCATCTGCAGTCTGTGGTATGACCACTCCTCCTACGTCTCCTGGAAATGTCCCGGCTGATTTGTCACATCCATACAGTAAAGCCTTTGGTACTACCACTG
Seq A exon
NA
Seq C2 exon
GTGGAAAAGGAACTCCTTCAGGAACCCCAGCGACCTCTCCTCCCCCAGCCCCGCCTTGTCCCCAAGACGACTGTGCGCACGGTCCAGCCTCCCAGGCCTCAGCCACACCCCCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470-15-16,15-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(5.3=100)
A:
NA
C2:
PF043887=Hamartin=FE(5.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCTCCTACGTCTCCTGG
R:
TGGGGTTCCTGAAGGAGTTCC
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]