BtaALTA0031448-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102977291-102978073:-
Coord C1 exon
chr11:102978030-102978073
Coord A exon
chr11:102977396-102977457
Coord C2 exon
chr11:102977291-102977395
Length
62 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
TCCCTCTGCTTTAAAATCAGGCT
3' ss Score
6.2
Exon sequences
Seq C1 exon
GTTGTCTTTACCCAGCAAGTCTGTCGACTGGACCCACTTCGGAG
Seq A exon
GCTCTCCTCCCTCAGATGAGATCTGCACCCTCCGTAACCAGTTGCTTTTACTGCACAACCAG
Seq C2 exon
TTACTCTACGAGCGTTTCAAGCGGCAGCAGCACGCGCTGCGCAACAGGCGGCTCCTGCGCAAGGTGATCCGGGCCTCGGCTCTGGAGGAGCACAACGCCGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190-23-28,23-27,23-26-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(2.1=100)
A:
NA
C2:
PF043887=Hamartin=PD(5.3=67.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCCAGCAAGTCTGTCGAC
R:
GCGTTGTGCTCCTCCAGAG
Band lengths:
135-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development