RnoALTA0042444-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7256970-7257893:+
Coord C1 exon
chr3:7256970-7257013
Coord A exon
chr3:7257727-7257741
Coord C2 exon
chr3:7257742-7257893
Length
15 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TCCCTCTGCTTTACAATCAGGCT
3' ss Score
7.42
Exon sequences
Seq C1 exon
GTTGTCCTTGCCCAGCAAGTCTGTTGACTGGACCCACTTTGGAG
Seq A exon
GCTCTCCCCCCTCAG
Seq C2 exon
ATGAGATCCGGACCCTCCGAGACCAGTTGCTCTTACTGCACAATCAGCTGCTGTACGAACGCTTTAAGCGGCAGCAGCATGCACTGAGGAACAGAAGGCTGCTGCGCAAGGTGATCCGAGCTGCGGCCCTGGAGGAGCACAACGCAGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470-22-25,22-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(2.1=100)
A:
NA
C2:
PF043887=Hamartin=PD(5.3=67.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGACTGGACCCACTTTGG
R:
TCTGTTCCTCAGTGCATGCTG
Band lengths:
118-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]