BtaALTA0031528-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017783 | TSPYL2
Description
TSPYL2; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKJ1]
Coordinates
chrX:95960193-95961362:+
Coord C1 exon
chrX:95960193-95960290
Coord A exon
NA
Coord C2 exon
chrX:95960623-95961362
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
AACCCCAGACTTCCCCACAGTAA
3' ss Score
1.18
Exon sequences
Seq C1 exon
ATTATCAAGAATGACCTGTGGGTTAACCCTGTGCGTTACTACATGATGGGAGAAGGGGGCTACAGAACAAGCAGAAAGAAGCAAGAAAAAGAAGAAAG
Seq A exon
NA
Seq C2 exon
TAAAAACAAGGATGAATATGAAGTGGTGATCATGGATGACTCTGATGACTATCACATCATGGAAGACATTATTGGAGAGACCTCAGACAGTGATGGTATCACCGACAATGAGACCATTCATGACGTCAAGATCTCTGACTTCATGGAGACTACTGACTGCTTCGAGACCACTGACAACGAGATAACTGACATCAGTGAGAGCCTCTGTGACAGCGAGTGCCCTGGCCACAATGAGACCACCGACAACAACGAAAGCCCCAATGACAACGAAACCACTGATAACAATGAGAGTGCTGATGACAAGGAGAGTACCAATGACAATAGTGAGAACCCTGAAGATGACAACACTGATGAGAACGAAGAGAACCCTGATGACAACGATGAGAATGCTGATGAGAACCCCAATGGTGATGAGAACCCCAAAGATGGCAACCAAAGGAGCAATGGCAACAACCAGGACAGCAGTGACAGTGACAATGAAGGAGACAATGATGGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017783-4-8,4-7,4-6-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0095613=NAP=PD(9.1=51.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGATGGGAGAAGGGGGCTA
R:
TCAGAGTCATCCATGATCACCACT
Band lengths:
102-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development