MmuALTA0019029-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000041096 | Tspyl2
Description
TSPY-like 2 [Source:MGI Symbol;Acc:MGI:106244]
Coordinates
chrX:148773758-148774270:-
Coord C1 exon
chrX:148774176-148774270
Coord A exon
chrX:148773936-148773938
Coord C2 exon
chrX:148773758-148773935
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
AGTTCTAAACTTGCCCACAGTAG
3' ss Score
3.68
Exon sequences
Seq C1 exon
ATCATCAAGAACGACCTGTGGGTTAACCCAGTACGCTACTATATGAGACGAGGTGGCTACAGATCAAGCAGAAAGAAGCAACACGGAAAGGAAAG
Seq A exon
TAG
Seq C2 exon
AGCCAAGAATCAATATGAAATGGTGATCATGGAAGATGCTCATGACCATTATGCAATTGAAGACATTCTCAGTGACATCTCAGAAATTGATGAGATCACTGACAATGAGACCATTCACGACATCAAGATCTCTGACTTCATGGAGACCACCGACTACTTCGAGACTACTGATAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041096-4-7,4-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.915
Domain overlap (PFAM):
C1:
PF0095613=NAP=PD(9.1=53.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGTGGCTACAGATCAAGC
R:
TGGTCATGAGCATCTTCCATGA
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: