HsaALTA1050677-4/7 @ hg38
Alternative 3'ss
Gene
ENSG00000184205 | TSPYL2
Description
TSPY like 2 [Source:HGNC Symbol;Acc:HGNC:24358]
Coordinates
chrX:53085227-53085839:+
Coord C1 exon
chrX:53085227-53085321
Coord A exon
chrX:53085631-53085745
Coord C2 exon
chrX:53085746-53085839
Length
115 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATG
5' ss Score
6.53
3' ss Seq
AGCCACAGCCTTCCTTACAGTAA
3' ss Score
1.13
Exon sequences
Seq C1 exon
ATTATCAAGAATGATCTGTGGGTTAACCCTCTACGCTACTACCTGAGAGAAAGGGGCTCCAGGATAAAGAGAAAGAAGCAAGAAATGAAGAAACG
Seq A exon
TAAAACCAGGGGCAGATGTGAGGTGGTGATCATGGAAGACGCCCCTGACTATTATGCAGTGGAAGACATTTTCAGCGAGATCTCAGACATTGATGAGACAATTCATGACATCAAG
Seq C2 exon
ATCTCTGACTTCATGGAGACCACCGACTACTTCGAGACCACTGACAATGAGATAACTGACATCAATGAGAACATCTGCGACAGCGAGAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184205-8-15,8-14,8-13,8-12,8-11,8-10,8-9-4/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.344 A=NA C2=0.908
Domain overlap (PFAM):
C1:
PF0095613=NAP=PD(9.1=53.1)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGAATGATCTGTGGGTTAACC
R:
CAGGATTCTCGCTGTCGCAG
Band lengths:
186-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains