RnoALTA0042566-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000061782 | Tspyl2
Description
TSPY-like 2 [Source:RGD Symbol;Acc:1563283]
Coordinates
chrX:22410518-22411032:-
Coord C1 exon
chrX:22410938-22411032
Coord A exon
chrX:22410696-22410698
Coord C2 exon
chrX:22410518-22410695
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
AGTTTTAAACTTCCCCACAGTAG
3' ss Score
5.03
Exon sequences
Seq C1 exon
ATTATCAAGAATGACCTGTGGGTTAACCCAGTACGCTACTACATGAGAGGAGGTGGCTACAGAACAAGCAGAAAGAAGCAACTAGGAAAGGAAAG
Seq A exon
TAG
Seq C2 exon
AGCCAAGAATCAATATGAAATGGTGATCATGGAAGATGCTCATGACCATTATGCCGTTGAAGACATTCTCAGTGAAATCTCAGAAATTGATGAGATCACTGACAATGAGACCATTCACGACATCAAGATCTCTGACTTCATGGAGACCACTGACTACTTTGAGACCACTGATAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061782-4-8,4-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.907
Domain overlap (PFAM):
C1:
PF0095613=NAP=PD(8.6=50.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGGCTACAGAACAAGC
R:
ACGGCATAATGGTCATGAGCA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]