RnoINT0157341 @ rn6
Intron Retention
Gene
ENSRNOG00000061782 | Tspyl2
Description
TSPY-like 2 [Source:RGD Symbol;Acc:1563283]
Coordinates
chrX:22410055-22411032:-
Coord C1 exon
chrX:22410938-22411032
Coord A exon
chrX:22410696-22410937
Coord C2 exon
chrX:22410055-22410695
Length
242 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
TTTAAACTTCCCCACAGTAGAGC
3' ss Score
2.49
Exon sequences
Seq C1 exon
ATTATCAAGAATGACCTGTGGGTTAACCCAGTACGCTACTACATGAGAGGAGGTGGCTACAGAACAAGCAGAAAGAAGCAACTAGGAAAGGAAAG
Seq A exon
GTGATGAGAGAAATGGCGCCTAAGAGGTTTGGGGGGTTGTTGTTTTTAAATAGGGCAGAGACTATCCTGGTGTCACACAGGATTTATAGAAGCACAGGGGACCATTGAGGTAACCCAATGCATACATTGTTTACAAATGAACGGTGATGCCCAGAAGTGGCAATGGGATTTTCTCCCATTCTTAGAAACTTCCCAGTTACTCCCATTAACCTTACACTAAGTTTTAAACTTCCCCACAGTAG
Seq C2 exon
AGCCAAGAATCAATATGAAATGGTGATCATGGAAGATGCTCATGACCATTATGCCGTTGAAGACATTCTCAGTGAAATCTCAGAAATTGATGAGATCACTGACAATGAGACCATTCACGACATCAAGATCTCTGACTTCATGGAGACCACTGACTACTTTGAGACCACTGATAATGAGGTAACTGATGCCAATGAGAACCTGTGCGACAGTGAGAATCCTGACCACAGTGAGGGCTCCCACAAGATCACTGACAACAAAGGGAGCATTGCCACCGGTCCAGATGACAACGGTGACAAGCCAGAGGAAAAGAATACCTATGACAGTGAGGATTCCAACAGTGAGAAAGCTGATGGGGACAACAAAACCCTAGAAGGTGACAACCAGCAGGTTACTAATATCCAAGATAGCAGTGATAGTGACAATGGAGATGAGGGTAGTGATGATGAAGATGATGATGGCAATGAGGGTGACAATGAGGGCAGTGATGATGATGACAGGGACATTAAATACTATAAGAATGGCTTCGAAGTCTTTGACAAGGCTCTGGATAACCGCACCATCCAAGATGTCTATGAGGAGGAGGTAGAAATCATCTCTGAAGACTCAGTTGAGGAAGAAGAGGAAGAGACCAGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061782:ENSRNOT00000084129:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.905
Domain overlap (PFAM):
C1:
PF0095613=NAP=PD(8.6=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGGCTACAGAACAAGC
R:
GTCAGTGATCTTGTGGGAGCC
Band lengths:
300-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]