BtaINT0154094 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017783 | TSPYL2
Description
TSPYL2; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKJ1]
Coordinates
chrX:95960193-95961362:+
Coord C1 exon
chrX:95960193-95960290
Coord A exon
chrX:95960291-95960622
Coord C2 exon
chrX:95960623-95961362
Length
332 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
AACCCCAGACTTCCCCACAGTAA
3' ss Score
1.18
Exon sequences
Seq C1 exon
ATTATCAAGAATGACCTGTGGGTTAACCCTGTGCGTTACTACATGATGGGAGAAGGGGGCTACAGAACAAGCAGAAAGAAGCAAGAAAAAGAAGAAAG
Seq A exon
GTGATGGCAGAGGGTTGATGGCTGAGAGGTGGTTTGTTAAGGGTGGGGCAAAGACTAAGCTAGTGTCACACAGTATTCATAGAGCCAACAGGGACCTTTGAGATGATCCAATCCAATATGTTTTACAAGTGGGTAAAACATATTGCCTAGAAATGGGGTGTGATTGGCTGAGGTTATGCTCTCAGGGGCAGAAATGGGACTCTCCCCACCTAGCCTCATCCCTGGGAACCCTTGTAGCCTATTGCCTCCCCTGTTACCACCTTTCAGTGTTTGTCTGCTCTGGGTACATCACCTCCCACCAACCCTATACTCAACCCCAGACTTCCCCACAG
Seq C2 exon
TAAAAACAAGGATGAATATGAAGTGGTGATCATGGATGACTCTGATGACTATCACATCATGGAAGACATTATTGGAGAGACCTCAGACAGTGATGGTATCACCGACAATGAGACCATTCATGACGTCAAGATCTCTGACTTCATGGAGACTACTGACTGCTTCGAGACCACTGACAACGAGATAACTGACATCAGTGAGAGCCTCTGTGACAGCGAGTGCCCTGGCCACAATGAGACCACCGACAACAACGAAAGCCCCAATGACAACGAAACCACTGATAACAATGAGAGTGCTGATGACAAGGAGAGTACCAATGACAATAGTGAGAACCCTGAAGATGACAACACTGATGAGAACGAAGAGAACCCTGATGACAACGATGAGAATGCTGATGAGAACCCCAATGGTGATGAGAACCCCAAAGATGGCAACCAAAGGAGCAATGGCAACAACCAGGACAGCAGTGACAGTGACAATGAAGGAGACAATGATGGCAGTGATATTGAAGATAATGATGGCAATGAAGGTGACAACGAAGGTAGTGATGATGATGGCAACGAAGGTGACAATGAAGGCAGTGATGATGACGACCGAGACATTGAAGACTACGAGAATTACCTTGAAGACCCTGACAAGGATCACCATAACAATACCAACCAGGATGACTATGAGGACGAAGTAGAGAACATCTCTGAAGAAGAATCGTCAGTGGAGGAAGAGGAGGAGGGCAGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017783:ENSBTAT00000023648:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0095613=NAP=PD(9.1=51.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGGGCTACAGAACAAGC
R:
TCTCCTTGTCATCAGCACTCTCA
Band lengths:
355-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]