HsaINT0173918 @ hg19
Intron Retention
Gene
ENSG00000184205 | TSPYL2
Description
TSPY-like 2 [Source:HGNC Symbol;Acc:24358]
Coordinates
chrX:53114409-53115492:+
Coord C1 exon
chrX:53114409-53114503
Coord A exon
chrX:53114504-53114812
Coord C2 exon
chrX:53114813-53115492
Length
309 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATG
5' ss Score
6.53
3' ss Seq
AGCCACAGCCTTCCTTACAGTAA
3' ss Score
1.13
Exon sequences
Seq C1 exon
ATTATCAAGAATGATCTGTGGGTTAACCCTCTACGCTACTACCTGAGAGAAAGGGGCTCCAGGATAAAGAGAAAGAAGCAAGAAATGAAGAAACG
Seq A exon
GTAATGGGAGTTTGGTCGCTGAGAGGTGGTTTGTTGGGGATGGGGAAAAGACTAGTGTAACACAGGATTTATGGAGCCAAAAAGGGACCTTTGAGATAATCCCAGTGGAATATGTTTTACAAGTGGGAAATCATGCCCAGAAATGGCTTGAGGTTACACAGTCAGGGGCAGAAGTGGGACTTTACCCACCCTAGCCCCATTCCTGGGATCCCTTATAGCCTACTGCTTCCCCAGTTACTTCCCACCTTTGAGTGCTATGAGTACACCACCTCCCACCAACCCTATACTCAGCCACAGCCTTCCTTACAG
Seq C2 exon
TAAAACCAGGGGCAGATGTGAGGTGGTGATCATGGAAGACGCCCCTGACTATTATGCAGTGGAAGACATTTTCAGCGAGATCTCAGACATTGATGAGACAATTCATGACATCAAGATCTCTGACTTCATGGAGACCACCGACTACTTCGAGACCACTGACAATGAGATAACTGACATCAATGAGAACATCTGCGACAGCGAGAATCCTGACCACAATGAGGTCCCCAACAACGAGACCACTGATAACAACGAGAGTGCTGATGACCACGAAACCACTGACAACAATGAGAGTGCAGATGACAACAACGAGAATCCTGAAGACAATAACAAGAACACTGATGACAACGAAGAGAACCCTAACAACAACGAGAACACTTACGGCAACAACTTCTTCAAAGGTGGCTTCTGGGGCAGCCATGGCAACAACCAGGACAGCAGCGACAGTGACAATGAAGCAGATGAGGCCAGTGATGATGAAGATAATGATGGCAACGAAGGTGACAATGAGGGCAGTGATGATGATGGCAATGAAGGTGACAATGAAGGCAGCGATGATGACGACAGAGACATTGAGTACTATGAGAAAGTTATTGAAGACTTTGACAAGGATCAGGCTGACTACGAGGACGTGATAGAGATCATCTCAGACGAATCAGTGGAAGAAGAGGGCATTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184205-TSPYL2:NM_022117:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.864
Domain overlap (PFAM):
C1:
PF0095613=NAP=PD(9.1=53.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACCTGAGAGAAAGGGGCT
R:
TGTTGTCAGTGGTTTCGTGGT
Band lengths:
342-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)