RnoALTA0042566-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000061782 | Tspyl2
Description
TSPY-like 2 [Source:RGD Symbol;Acc:1563283]
Coordinates
chrX:22410518-22411032:-
Coord C1 exon
chrX:22410938-22411032
Coord A exon
NA
Coord C2 exon
chrX:22410518-22410695
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
TTTAAACTTCCCCACAGTAGAGC
3' ss Score
2.49
Exon sequences
Seq C1 exon
ATTATCAAGAATGACCTGTGGGTTAACCCAGTACGCTACTACATGAGAGGAGGTGGCTACAGAACAAGCAGAAAGAAGCAACTAGGAAAGGAAAG
Seq A exon
NA
Seq C2 exon
AGCCAAGAATCAATATGAAATGGTGATCATGGAAGATGCTCATGACCATTATGCCGTTGAAGACATTCTCAGTGAAATCTCAGAAATTGATGAGATCACTGACAATGAGACCATTCACGACATCAAGATCTCTGACTTCATGGAGACCACTGACTACTTTGAGACCACTGATAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061782-4-8,4-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.907
Domain overlap (PFAM):
C1:
PF0095613=NAP=PD(8.6=50.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGGCTACAGAACAAGC
R:
ACGGCATAATGGTCATGAGCA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]