BtaALTA0032481-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000020761 | USP33
Description
Bos taurus ubiquitin specific peptidase 33 (USP33), mRNA. [Source:RefSeq mRNA;Acc:NM_001101139]
Coordinates
chr3:67198183-67198551:+
Coord C1 exon
chr3:67198183-67198355
Coord A exon
chr3:67198457-67198480
Coord C2 exon
chr3:67198481-67198551
Length
24 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TTCTGTCAATGATGTTTCAGGTT
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTGTCTGTAACCCTCGAGACCTTTCAAGATCTGTCCTTGCCAATTCCTGGCAAGGAAGACCTTGCTAAACTGCATTCGTCAAGTCATCCAACATCTATAGTCAAAGCAGGATCATGTGGCGAAGCATATGCTCCACAAGGGTGGATAGCTTTTTTCATGGAGTATGTGAAGAG
Seq A exon
GTTTGTTGTCTCATGTGTCCCTAG
Seq C2 exon
CTGGTTTTGGGGTCCAGTAGTAACCTTGCAAGATTGTCTTGCTGCCTTCTTTGCCAGAGATGAACTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020761-19-24,19-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.8=100)
A:
NA
C2:
PF0044324=UCH=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGCAGGATCATGTGGCG
R:
GCAAGGTTACTACTGGACCCC
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development