MmuALTA0019632-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152374620-152374985:+
Coord C1 exon
chr3:152374620-152374789
Coord A exon
chr3:152374891-152374914
Coord C2 exon
chr3:152374915-152374985
Length
24 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
TTCTGTCAATGATGTTTCAGGTT
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTGTCTATAACCCTCGAGACCTTTCAGGATCTGTCCTTGCCGATTCCTGGCAAGGAGGACCTGGCTAAGCTGCACTCCTCCAGTCACCCAACTATAGTCAAAGCAGGGTCATGTGGTGAAGCGTACGCCCCGCAGGGGTGGATAGCTTTCTTCATGGAGTATGTGAAGAG
Seq A exon
GTTTGTTGTCTCATGTGTCCCTAG
Seq C2 exon
CTGGTTTTGGGGTCCAGTAGTTACCTTGCAAGATTGTCTTGCTGCCTTCTTCGCCAGAGATGAACTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437-31-38,31-37-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.8=100)
A:
NA
C2:
PF0044324=UCH=FE(4.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCATGTGGTGAAGCGTACG
R:
GCGAAGAAGGCAGCAAGACAA
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types