HsaALTA0009342-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:20059]
Coordinates
chr1:78187516-78187881:-
Coord C1 exon
chr1:78187709-78187881
Coord A exon
chr1:78187587-78187610
Coord C2 exon
chr1:78187516-78187586
Length
24 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TTCTATCAATGATGTTTCAGGTT
3' ss Score
8.31
Exon sequences
Seq C1 exon
GTGTCTGTAACCCTCGAGACCTTTCAAGATCTGTCCTTGCCAATTCCTGGCAAGGAAGACCTTGCTAAGCTGCATTCATCAAGTCATCCAACTTCTATAGTCAAAGCAGGATCATGTGGCGAAGCATATGCTCCACAAGGGTGGATAGCTTTTTTCATGGAATATGTGAAGAG
Seq A exon
GTTTGTTGTCTCATGTGTCCCTAG
Seq C2 exon
CTGGTTTTGGGGTCCAGTAGTAACCTTGCAAGATTGTCTTGCTGCCTTCTTTGCCAGAGATGAACTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254-19-23,19-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.8=100)
A:
NA
C2:
PF0044324=UCH=FE(4.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGCAGGATCATGTGGCG
R:
GCAAGGTTACTACTGGACCCC
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)