BtaALTA0033559-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47661799-47662172:-
Coord C1 exon
chr16:47662036-47662172
Coord A exon
NA
Coord C2 exon
chr16:47661799-47661959
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCCTTGTCCCCACAGCCAGCCT
3' ss Score
-0.83
Exon sequences
Seq C1 exon
GAACGAGCGGCCATACGTCTGTGAGTTCTGCAGCCACGCCTTCACCCAGAAGGCCAATCTCAACATGCACCTGCGCACGCACACGGGCGAGAAGCCCTTCCAGTGCCACCTTTGTGGCAAGACCTTCCGCACCCAAG
Seq A exon
NA
Seq C2 exon
CCTGGACAAGCACAACCGCACCCACACCGGCGAGAGGCCCTTCAGCTGTGAGTTCTGTGAGCAGCGCTTCACAGAGAAGGGGCCCCTGCTCAGGCATGTGGCCAGCCGCCACCAGGAGGGCCGGCCCCACTTCTGCCAGATCTGCGGGAAGACCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735-12-13,12-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=46.4),PF134651=zf-H2C2_2=WD(100=46.4),PF095265=DUF2387=PU(9.2=10.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTGTGGCAAGACCTTCC
R:
TGCTCACAGAACTCACAGCTG
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development