RnoALTA0045303-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009595 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:RGD Symbol;Acc:1311581]
Coordinates
chr5:169192553-169192924:-
Coord C1 exon
chr5:169192788-169192924
Coord A exon
NA
Coord C2 exon
chr5:169192553-169192713
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACCTTGTCCCCCACAGCCAGTCT
3' ss Score
0.81
Exon sequences
Seq C1 exon
GAATGAAAGGCCGTATGTCTGTGAGTTCTGCAGCCATGCATTCACCCAGAAGGCCAACCTCAACATGCACCTGCGCACACACACAGGAGAGAAGCCCTTCCAGTGCCACCTCTGTGGGAAGACCTTCCGCACCCAAG
Seq A exon
NA
Seq C2 exon
TCTGGACAAGCACAACCGCACCCACACGGGTGAGAGGCCTTTTAGCTGTGAATTCTGTGAGCAGCGCTTCACTGAGAAGGGCCCCCTTCTGAGGCATGTGGCCAGCCGTCATCAGGAGGGCAGACCTCATTTCTGCCAGATCTGTGGCAAGACCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009595-12-14,12-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=46.4),PF134651=zf-H2C2_2=WD(100=46.4),PF095265=DUF2387=PU(9.4=10.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACAGGAGAGAAGCCCTT
R:
CAGCTAAAAGGCCTCTCACCC
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]