MmuALTA0020379-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028952 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:MGI Symbol;Acc:MGI:2140248]
Coordinates
chr4:152020544-152020915:-
Coord C1 exon
chr4:152020779-152020915
Coord A exon
NA
Coord C2 exon
chr4:152020544-152020704
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACCTTGTCCCCCATAGCCAGTTT
3' ss Score
1.47
Exon sequences
Seq C1 exon
GAATGAAAGGCCTTATGTCTGTGAGTTCTGCAGCCATGCCTTCACCCAGAAGGCCAACCTCAACATGCACCTGCGCACACACACCGGCGAGAAGCCTTTCCAGTGCCACCTCTGTGGGAAGACCTTCCGCACCCAAG
Seq A exon
NA
Seq C2 exon
TTTGGACAAGCACAACCGCACCCACACGGGCGAGAGGCCTTTCAGCTGTGAATTCTGTGAGCAGCGCTTCACTGAGAAGGGCCCCCTTCTGAGGCATGTGGCCAGCCGCCATCAAGAGGGCAGGCCCCACTTCTGCCAGATCTGTGGCAAGACCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028952-15-20,15-19-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCAGTGCCACCTCTGTG
R:
TTCACAGCTGAAAGGCCTCTC
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types