BtaALTA0033751-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21399458-21401094:+
Coord C1 exon
chr7:21399458-21399596
Coord A exon
chr7:21400997-21400999
Coord C2 exon
chr7:21401000-21401094
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
TACCTGCCCTTCTCTTCCAGAAG
3' ss Score
10.5
Exon sequences
Seq C1 exon
GTGGTAACAGACGACAAGTACGAGGTCTCTTCTGACCCAGACGCCAGCATTGTCATCTCCTCCTGCGAGGAGCCCCGGATACAGGTCGCTGTGTCCATCACCTCGCCCCTAATGCGGGAGGACCCCTCCGCAGACCAAG
Seq A exon
AAG
Seq C2 exon
GAACCGAGGTGCCTCTGCCGGACCCAGGAGACGTGCTGAGCCCAGAGAAGTGCCTGCAGGCACTGGCTGCTCTCCGCCACGCCAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755-20-20,20-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(18.6=100)
A:
NA
C2:
PF075289=DZF=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCACCTCGCCCCTAATG
R:
CACTTCTCTGGGCTCAGCAC
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development