HsaALTA0009690-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3811270-3813956:-
Coord C1 exon
chr19:3813818-3813956
Coord A exon
chr19:3811365-3811367
Coord C2 exon
chr19:3811270-3811364
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
CCTCGAGGTTTTTCTTCTAGAAG
3' ss Score
5.74
Exon sequences
Seq C1 exon
ATGGTGACCGAGGATGAGTATGAGGTCTCCTCCGACCCTGAAGCCAACATTGTCATCTCCTCCTGTGAGGAGCCCAGGATGCAGGTCACCATATCTGTCACCTCACCTCTGATGCGGGAGGACCCCTCCACAGACCCAG
Seq A exon
AAG
Seq C2 exon
GTGTGGAGGAGCCTCAGGCTGATGCAGGTGATGTCCTGAGCCCCAAGAAGTGCCTCGAGTCCCTGGCCGCCCTCCGTCATGCCAGGTGGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-16-17,16-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.312
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(18.6=100)
A:
NA
C2:
PF075289=DZF=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGATGCAGGTCACCATA
R:
CATCACCTGCATCAGCCTGAG
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)