MmuALTA1026899-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:81248390-81249071:+
Coord C1 exon
chr10:81248390-81248528
Coord A exon
chr10:81248984-81248988
Coord C2 exon
chr10:81248989-81249071
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
3' ss Seq
TAGGATTCTATCCCTTCTAGGAC
3' ss Score
8.16
Exon sequences
Seq C1 exon
ATAGTGGCAGAAGACAAGTACGAGGTCTCATCTGACCATGACGCCAACATTGTTATCTCAGCCTGTGTGGAGCCTGGGGTGAAGGTCACCGTGTCTGCCACCTCACCTCTGATGCGGGAAGATCCCTCTGTAAAACAAG
Seq A exon
GACAG
Seq C2 exon
CAAGACGCTCTGTCCGACCCAGAGGACGTCTTAGACCGGGAGAGGTGCCTTGAGACCCTGGCAGCCCTCCGCCATGCTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949-26-27,26-26-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.231
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(18.6=100)
A:
NA
C2:
PF075289=DZF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCCACCTCACCTCTGAT
R:
CCTCTCCCGGTCTAAGACGTC
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types