BtaALTD0002088-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17910914-17912587:-
Coord C1 exon
chr13:17912481-17912587
Coord A exon
NA
Coord C2 exon
chr13:17910914-17911142
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
GTGTTTTCCATCTTCCCCAGGAC
3' ss Score
11.33
Exon sequences
Seq C1 exon
AAGCAGCATCTCAGGAGAACTTAGAGCAGTTACAAGAGAAGAATAATGCTTCCATAAGAAGTCAGATGGAACTCAGAATTAAAGACTTGGAATCTGAACTCTCCAAG
Seq A exon
NA
Seq C2 exon
GACTCATGAGAGGCTGGCGGTGATCAGCACCAAACTTGAGGTGGAGAAAGAGCAGAACAGATCTTTACTCAGCACTCTTAGCACGAGGCCAGTCCTGGAGCCCCCTTGTGTTGGAAATTTCAATAATCCTGTAGTGCTCAATGGAAATCTTACTCCAAGAGCAAACGTAGGTTTTTCTACCTCAATTCCACGCCCTTCGAATAACAGCATGGAGACTTACTTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-34-36,35-36,36-36-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=NA C2=0.416
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PU(47.3=73.6)
A:
NA
C2:
PF120013=DUF3496=PD(51.8=75.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCATCTCAGGAGAACTT
R:
TCTGTTCTGCTCTTTCTCCACC
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development