BtaALTD0002088-3/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17910914-17912587:-
Coord C1 exon
chr13:17912481-17912587
Coord A exon
chr13:17912374-17912480
Coord C2 exon
chr13:17910914-17911142
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GTGTTTTCCATCTTCCCCAGGAC
3' ss Score
11.33
Exon sequences
Seq C1 exon
AAGCAGCATCTCAGGAGAACTTAGAGCAGTTACAAGAGAAGAATAATGCTTCCATAAGAAGTCAGATGGAACTCAGAATTAAAGACTTGGAATCTGAACTCTCCAAG
Seq A exon
GTGAAAACTTTGCAAGAAGATTCTCATAAAGCAGAGTTGGAAAAATATAAGCAACTCTACCTAGTAGAACTAGAAGTTAGAAAGTCGTTGGAAGGTAAACTAGACAA
Seq C2 exon
GACTCATGAGAGGCTGGCGGTGATCAGCACCAAACTTGAGGTGGAGAAAGAGCAGAACAGATCTTTACTCAGCACTCTTAGCACGAGGCCAGTCCTGGAGCCCCCTTGTGTTGGAAATTTCAATAATCCTGTAGTGCTCAATGGAAATCTTACTCCAAGAGCAAACGTAGGTTTTTCTACCTCAATTCCACGCCCTTCGAATAACAGCATGGAGACTTACTTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-34-36,35-36,36-36-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=NA C2=0.416
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PU(47.3=73.6)
A:
NA
C2:
PF120013=DUF3496=PD(51.8=75.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATAAGAAGTCAGATGGAACTCA
R:
TTCGAAGGGCGTGGAATTGAG
Band lengths:
258-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development