BtaEX0003519 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17908496-17912587:-
Coord C1 exon
chr13:17912374-17912587
Coord A exon
chr13:17910914-17911142
Coord C2 exon
chr13:17908496-17908541
Length
229 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCCATCTTCCCCAGGAC
3' ss Score
11.33
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AAGCAGCATCTCAGGAGAACTTAGAGCAGTTACAAGAGAAGAATAATGCTTCCATAAGAAGTCAGATGGAACTCAGAATTAAAGACTTGGAATCTGAACTCTCCAAGGTGAAAACTTTGCAAGAAGATTCTCATAAAGCAGAGTTGGAAAAATATAAGCAACTCTACCTAGTAGAACTAGAAGTTAGAAAGTCGTTGGAAGGTAAACTAGACAA
Seq A exon
GACTCATGAGAGGCTGGCGGTGATCAGCACCAAACTTGAGGTGGAGAAAGAGCAGAACAGATCTTTACTCAGCACTCTTAGCACGAGGCCAGTCCTGGAGCCCCCTTGTGTTGGAAATTTCAATAATCCTGTAGTGCTCAATGGAAATCTTACTCCAAGAGCAAACGTAGGTTTTTCTACCTCAATTCCACGCCCTTCGAATAACAGCATGGAGACTTACTTGACCAAG
Seq C2 exon
ATGCGGCAGGAGTTGGACAGGAGTATAACTAGAGAACTAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288-'36-37,'36-36,38-37
Average complexity
C1
Mappability confidence:
100%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=0.416 C2=0.219
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PU(47.3=73.6)
A:
PF120013=DUF3496=PD(51.8=75.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGCATCTCAGGAGAACT
R:
AGTTCTCTAGTTATACTCCTGTCCA
Band lengths:
252-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development