RnoEX6014806 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150550152-150552292:-
Coord C1 exon
chr4:150552078-150552292
Coord A exon
chr4:150550812-150551040
Coord C2 exon
chr4:150550152-150550197
Length
229 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTGTGGTCTTCACAGGAC
3' ss Score
10.38
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GCTCAAGCAGCGTCTCAGGAAAACTTGGAGCAGTTAAGAGAGAACAGTAACGCTTCACTTAGAAGTCAGATGGAGCTCAGGATTCAAGACCTGGAATCCCAGCTCTACAAAATGAAAGCCCAGGAAGACTTCGACAAAATAGAACTAGAAAAGTACAAGCAACTCTACCAGGAAGAGTTCAGAGTTAGAAAAGCGTTGTCCAGTAAACTAAACAG
Seq A exon
GACTACTGAGAGGCTGGAGGAGACCAGCACCAAGCTGCTCCTGGAGGAGCAGCAGAACAGGTCTCTGCTGAGCTCTCTCAGTACGAGGCCTGTTGTAGAGTGTCCCTGTGTTGGAAAGCTTCATAATAGTTTGGTATTAAACAGAACTCTTATTCCAAGAGAAAGCCTAGCGGTTCCTACCTCAGGCCTACAGCCATCAAATAAAAGAGTGGAGATCTTCCTGACCAAG
Seq C2 exon
ATGCATCAAGAGTTGGAAAAAAGTATAAATAGAGAACTTAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'45-44,'45-43,46-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=0.182 C2=0.188
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PU(46.8=72.2)
A:
PF120013=DUF3496=PD(52.3=75.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]