GgaEX1002192 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:26132503-26135544:+
Coord C1 exon
chr1:26132503-26132594
Coord A exon
chr1:26133002-26133248
Coord C2 exon
chr1:26135499-26135544
Length
247 bp
Sequences
Splice sites
3' ss Seq
CATGTTTTTAAATATTTCAGAGC
3' ss Score
8.37
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AAAGAATCCACACAGGCTGAAGTGGAAAAATACAAAGAAATGTATCTGGAAGAAATGAAAATTAGAAGAAGCCTAGCAAATAAGCTGGAAAG
Seq A exon
AGCCAATGAGAGACTAGCAGAAGCCAATGCTAAGCTCCTTCAGGAGCGCCACAGAAGCAAATCTTTAATTGCAAGTAGCATTGTCACTGGAGGTCTGTCTGCAAGTCCAGTTCTGTATTCAACTGAACTGGGACATCTTGGCAACAATTTGGCACTGAACAGAAGTCTCAGCCTAGGAGGAAGCTTCCTAGGCACAGCTGGGAATGCGTTATCATCAAGAAACAAGGTTGAAGCCTACATGGCTAAG
Seq C2 exon
ATACGGAAGGAACTGGATGAAAAAATCACTAAAGAACTTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'30-27,'30-26,31-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.385 C2=NA
Domain overlap (PFAM):
C1:
PF120013=DUF3496=FE(37.5=100)
A:
PF120013=DUF3496=PD(38.9=85.4)
C2:
PF120013=DUF3496=PD(10.0=56.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]