GgaEX1002192 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24105894-24109079:+
Coord C1 exon
chr1:24105894-24106129
Coord A exon
chr1:24106537-24106783
Coord C2 exon
chr1:24109034-24109079
Length
247 bp
Sequences
Splice sites
3' ss Seq
CATGTTTTTAAATATTTCAGAGC
3' ss Score
8.37
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACACAGGCAGCCTCCCAGGACAGGTTAGAACAAATCAGAGCCAATCATCATGCCTCACTGAGAAACCAACTAAAGCACAGAATTAAAGATCTCGAATGTGAGTTGGACAGAATAAAAAATACTCAACAGGACAGTATTTTTCAAAAAGAATCCACACAGGCTGAAGTGGAAAAATACAAAGAAATGTATCTGGAAGAAATGAAAATTAGAAGAAGCCTAGCAAATAAGCTGGAAAG
Seq A exon
AGCCAATGAGAGACTAGCAGAAGCCAATGCTAAGCTCCTTCAGGAGCGCCACAGAAGCAAATCTTTAATTGCAAGTAGCATTGTCACTGGAGGTCTGTCTGCAAGTCCAGTTCTGTATTCAACTGAACTGGGACATCTTGGCAACAATTTGGCACTGAACAGAAGTCTCAGCCTAGGAGGAAGCTTCCTAGGCACAGCTGGGAATGCGTTATCATCAAGAAACAAGGTTGAAGCCTACATGGCTAAG
Seq C2 exon
ATACGGAAGGAACTGGATGAAAAAATCACTAAAGAACTTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'42-44,'42-43,43-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGGCAGCCTCCCAG
R:
TTTTTCATCCAGTTCCTTCCGT
Band lengths:
260-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]