BtaALTD0003182-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37076971-37078299:+
Coord C1 exon
chr2:37076971-37076997
Coord A exon
chr2:37076998-37077003
Coord C2 exon
chr2:37078234-37078299
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
AATTTTATCTGGCTTAATAGGAA
3' ss Score
6.84
Exon sequences
Seq C1 exon
GAGTTGGAGAGGCATAGACTAGATATG
Seq A exon
GTATGG
Seq C2 exon
GAACGAGAGAGAAGGCGACAACATATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAGGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-33-35,34-35-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGAGAGGCATAGACTAGA
R:
TCTGCCTTTTTACGAGCTTCCA
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development