DreALTD0000175-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52395944-52400818:+
Coord C1 exon
chr9:52395944-52395970
Coord A exon
chr9:52395971-52395976
Coord C2 exon
chr9:52400753-52400818
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
TACCTCTAATGTGTGTGTAGGAG
3' ss Score
5.84
Exon sequences
Seq C1 exon
GAGTTGGAGAGACATAGACTAGATATG
Seq A exon
GTATGG
Seq C2 exon
GAGCGGGAGAGACGTCGTCAGCATGTGATGTTGATGAAGGCGATGGAGGCCAAGAAGAAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979-25-31,26-31-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSDART00000097149fB72
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGGAGAGACATAGACTAGATATG
R:
CTCTGCTTTCTTCTTGGCCTCC
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]