GgaALTD0005048-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38218826-38220094:-
Coord C1 exon
chr7:38220068-38220094
Coord A exon
chr7:38220062-38220067
Coord C2 exon
chr7:38218826-38218891
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
AATCTTATCTGCTTCAATAGGAA
3' ss Score
7.09
Exon sequences
Seq C1 exon
GAGTTGGAGAGGCATAGACTAGATATG
Seq A exon
GTATGG
Seq C2 exon
GAACGAGAGAGGAGAAGACAGCATATGATGCTTATGAAAGCCATGGAAGCACGTAAAAAGGCGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-24-29,25-29-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGAGAGGCATAGACTAGA
R:
TCCGCCTTTTTACGTGCTTCC
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]