BtaALTD0004783-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30711827-30714809:-
Coord C1 exon
chr16:30714650-30714809
Coord A exon
NA
Coord C2 exon
chr16:30711827-30711944
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTACAC
5' ss Score
4.06
3' ss Seq
TCTTTCTCTTTTGATCTTAGAAC
3' ss Score
8.82
Exon sequences
Seq C1 exon
CCGGGTTTCCCTTATCCATCCCCTCATCATCACTCCGGTCTGATCTCCTCTCCGATCAACTTTGAGCACATCTATCACATGACTGTTAATTCTGCTGAAAAATTTCTCTCTCCTGATTCCATAAACCCTGAATATTCCCCGTCTCTGCGCTCTGTCCCCG
Seq A exon
NA
Seq C2 exon
AACCCTCGGCCTCAGGAAAGTCGGACAGCATTCAGTGGCTCCGTCAGTATTCCGTCTATCACCAAATCCCGCCCTGAACCCGGTCGCTCCATGAGCGCCAGCAGTGGCCTATCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777-50-64,51-64-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSBTAT00000029173fB1549
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGAATATTCCCCGTCTCT
R:
CAGGGCGGGATTTGGTGATAG
Band lengths:
112-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development