GgaALTD0003658-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13334762-13339867:+
Coord C1 exon
chr3:13334762-13334918
Coord A exon
NA
Coord C2 exon
chr3:13339750-13339867
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTACTC
5' ss Score
1.92
3' ss Seq
GTTGTGTGTCTGCATTGCAGAAT
3' ss Score
8.67
Exon sequences
Seq C1 exon
CGCTCCCCTTATCAATTCCCTCATCATCACTCCCGTCTGATCTCCTCTCCGAGCAACTTTGAACACATCTACCACATGACTGTTAATTCAGCTGAAAAATTCCTCTCTTATGATTCCATAAACACTGCATTTTCCCCGCCTCCGTGCTCTGCCCTGG
Seq A exon
NA
Seq C2 exon
AATCTTCGGCCTCAGGAAAGTCGGACCGTATTCAGTGGCTCTGTCAGTATCCCATCGATCACGAAATCCCGCACAGAACCAGGACGATCGATGAGCGCAAGCAGTGGGTTAGCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-41-51,42-51-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACACTGCATTTTCCCCGC
R:
TGCGGGATTTCGTGATCGATG
Band lengths:
112-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]